R：无法在 OSX El Capitan 上安装 R 3.3.1 的 Rcpp 包

Question

我正在尝试在 Mac OS X El Capitan 上安装 R Rcpp 包，并在 R 控制台中安装 R 的自制程序

> install.packages("Rcpp")
Installing package into ‘/usr/local/lib/R/3.3/site-library’
(as ‘lib’ is unspecified)
trying URL 'https://cloud.r-        project.org/src/contrib/Rcpp_0.12.5.tar.gz'
Content type 'application/x-gzip' length 2397088 bytes (2.3 MB)
==================================================
downloaded 2.3 MB

* installing *source* package ‘Rcpp’ ...
** package ‘Rcpp’ successfully unpacked and MD5 sums checked
** libs
clang++ -I/usr/local/Cellar/r/3.3.1/R.framework/Resources/include -    DNDEBUG -I/usr/local/include -I/usr/local/opt/ -    I/Library/Java/JavaVirtualMachines/jdk1.8.0_66.jdk/Contents/Home/jre/../include -    I/Library/Java/JavaVirtualMachines/jdk1.8.0_66.jdk/Contents/Home/jre/../i nclude/darwin -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I/usr/local/opt/openssl/include -I/usr/local/include    -fPIC  -g -O2  -c Date.cpp -o Date.o
Date.cpp:31:10: fatal error: 'Rcpp.h' file not found
#include <Rcpp.h>
     ^
1 error generated.
make: *** [Date.o] Error 1
ERROR: compilation failed for package ‘Rcpp’
* removing ‘/usr/local/lib/R/3.3/site-library/Rcpp’

The downloaded source packages are in
‘/private/var/folders/g8/rqv40nhs3zqcntnz_9t9l60w0000gr/T/Rtmpq2VPG3/    downloaded_packages’
Warning message:
In install.packages("Rcpp") :
  installation of package ‘Rcpp’ had non-zero exit status

尝试使用以下方式搜索 Rcpp.h：

$locate Rcpp.h
/usr/local/lib/R/3.2/site-library/Rcpp/include/Rcpp.h

我可以符号链接到 R/3.2 目录，但这似乎有风险？

尝试过：

brew update; brew install Rcpp

收到：

Error: No available formula with the name "rcpp" ==> Searching for similarly named formulae... Error: No similarly named formulae found. ==> Searching taps... Error: No formulae found in taps.

会话信息：

> sessionInfo()
R version 3.3.1 (2016-06-21)
Platform: x86_64-apple-darwin15.5.0 (64-bit)
Running under: OS X 10.11.5 (El Capitan)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] tools_3.3.1

Answer 1

首先，通过以下方式卸载所有以前的依赖项：

brew uninstall r

接下来，尝试在以下 brew 语句下安装 R：

# Grab xquartz
brew install cask
brew cask install xquartz

# Install R w/ GCC (compiled under)
brew tap homebrew/science
brew install gcc
brew install r

然后尝试：

install.packages("Rcpp")

Answer 2

已将 tar 文件从 CRAN 下载到单独的目录（例如 /tmp）。 tar-x Rcpp<*>.tar.gz。在我的 R Makevars 文件中将 -I/tmp/Rcpp/inst/include 添加到 PKG_CPPFLAGS。在 R 控制台中 install.packages("Rcpp")。仍然不知道为什么 "normal" / "standard" 进程不起作用

Answer 3

关闭 McAfee 等任何防病毒软件，然后您应该能够毫无问题地安装软件包。它解决了我的问题。

R：无法在 OSX El Capitan 上安装 R 3.3.1 的 Rcpp 包

R: Unable to install Rcpp package for R 3.3.1 on OSX El Capitan

macos

r

rcpp

osx-elcapitan