在 Python 中使用 K-Medoids 聚类提取质心及其数据点？

Question

我在一维数组 X 中有一些数据，其中包含 10 个元素。我对这个数据应用了 KMedoids 聚类，聚类数为 3。应用 KMedoids 后，我得到了每个集群的集群标签 (id) 和质心。

from sklearn.metrics import silhouette_samples
from sklearn_extra.cluster import KMedoids
import pandas as pd
import numpy as np

X = np.array([0.85142858, 0.85566274, 0.85364912, 0.81536489, 0.84929932, 
              0.85042336, 0.84899714, 0.82019115, 0.86112067, 0.8312496 ])
X = X.reshape(-1, 1)

model1 = KMedoids(n_clusters=3, random_state=0).fit(X)
cluster_labels = model1.predict(X)  
clusters, counts = np.unique(cluster_labels[cluster_labels>=0], 
                             return_counts=True)
centroids = np.array(model1.cluster_centers_)

print("For centroids", centroids) 
print("***************")
for i in range(len(X)):
    print(i, X[i])

这段代码的结果是

For centroids [[0.85566274]
     [0.85042336]
     [0.82019115]]
    ***************
    0 [0.85142858]
    1 [0.85566274]
    2 [0.85364912]
    3 [0.81536489]
    4 [0.84929932]
    5 [0.85042336]
    6 [0.84899714]
    7 [0.82019115]
    8 [0.86112067]
    9 [0.8312496]

但是，我想用 datapoint.for 示例显示质心，

For centroids [[0.85566274] , 1 [0.85566274]
For centroids [0.85042336]  , 5 [0.85042336]
For centroids [0.82019115]] , 7 [0.82019115]

我怎样才能做到这一点？

Answer 1

您可以打印一个 table 带有标签、中心点和索引的列，如下所示：

import numpy as np
from sklearn_extra.cluster import KMedoids

X = np.array([[0.85142858],
              [0.85566274],
              [0.85364912],
              [0.81536489],
              [0.84929932],
              [0.85042336],
              [0.84899714],
              [0.82019115],
              [0.86112067],
              [0.8312496 ]])

kmedoids = KMedoids(n_clusters=3, random_state=0).fit(X)

print('Label   Medoid        Index')
print('---------------------------')
for index in kmedoids.medoid_indices_:
    label = kmedoids.labels_[index]
    medoid = X[index]
    print(f'{label:<7} {medoid}  {index}')

输出

Label   Medoid        Index
---------------------------
0       [0.85566274]  1
1       [0.85042336]  5
2       [0.82019115]  7

或者，您可以根据您的要求将结果存储在 pandas 数据框中：

import pandas as pd

df = pd.DataFrame({'label': kmedoids.labels_[kmedoids.medoid_indices_],
                   'medoid': np.squeeze(X[kmedoids.medoid_indices_]),
                   'index': kmedoids.medoid_indices_})
print(df)

输出

   label    medoid  index
0      0  0.855663      1
1      1  0.850423      5
2      2  0.820191      7

在 Python 中使用 K-Medoids 聚类提取质心及其数据点？

Extracting centroids with its data point using K-Medoids clustering in Python?

python

numpy

cluster-analysis

pandas

scikit-learn

输出

输出